Better Hinge Seal?

Hi folks. Been a while since I've been here but hope one of you can give me some help.
Background: I've got a 2005 Little Guy 4 wide Deluxe which means it has the cabinets and the shelf for a galley at the rear. Over the years, its been parked outside, sometimes covered and sometimes not (probably covered less than half the time). It sets in a storage lot when I'm not using it so its hard to keep covers on (sticky fingers?) and I also don't see it often so I don't know when it blows off.
Anyway, turns out that there was a leak around a screw that went through the top filon piece which finally did enough damage that I saw it so I'm trying to repair the dry and make sure that I don't have new leaks. I'll be replacing the rotted wood and reattaching the hatch and would like to ensure the best seal.
THe LIttle Guy of this era's top is made with a 2x4 frame with a layer of what we used to call Masonite (pressed fiber board) and then a layer of Filon on top. The hinge (as shown in the pictures) is the black aluminum hinge and mounting flange. From outside in, there is the hinge flange (black in the picture), a layer of butyl tape, a piece of aluminum bar stock (silver in the picture) and then another layer of butyl tape. Next in this sandwich is the filon, the masonite, another layer of butyl and the frame piece.
In reinstalling this, I'm wondering whether I would get a better seal if changed the order to this--> From outside in the hinge flange, a layer of butyl tape, the filon, butyl, the piece of aluminum bar stock, butyl tape. masonite, another layer of butyl and the frame piece.
Your guidance including better ideas would be greatly appreciated.
Background: I've got a 2005 Little Guy 4 wide Deluxe which means it has the cabinets and the shelf for a galley at the rear. Over the years, its been parked outside, sometimes covered and sometimes not (probably covered less than half the time). It sets in a storage lot when I'm not using it so its hard to keep covers on (sticky fingers?) and I also don't see it often so I don't know when it blows off.
Anyway, turns out that there was a leak around a screw that went through the top filon piece which finally did enough damage that I saw it so I'm trying to repair the dry and make sure that I don't have new leaks. I'll be replacing the rotted wood and reattaching the hatch and would like to ensure the best seal.
THe LIttle Guy of this era's top is made with a 2x4 frame with a layer of what we used to call Masonite (pressed fiber board) and then a layer of Filon on top. The hinge (as shown in the pictures) is the black aluminum hinge and mounting flange. From outside in, there is the hinge flange (black in the picture), a layer of butyl tape, a piece of aluminum bar stock (silver in the picture) and then another layer of butyl tape. Next in this sandwich is the filon, the masonite, another layer of butyl and the frame piece.
In reinstalling this, I'm wondering whether I would get a better seal if changed the order to this--> From outside in the hinge flange, a layer of butyl tape, the filon, butyl, the piece of aluminum bar stock, butyl tape. masonite, another layer of butyl and the frame piece.
Your guidance including better ideas would be greatly appreciated.