Problem sealing the hatch

Hi folks, I've been building my 6x10 teardrop (yeah, it's wide - I want to fit a family of 4 so the thinking was we'd sleep sideways, and have roughly 6x8 sleeping area to fit us all). I have been able to progress without any major problems so far thanks to the amazing content on this site.
I'm at the point now, that I want to start designing and building the hatch, and I realized I made a fundamental mistake when building the deck and the walls. I intended to follow a hatch sealing method from Tony Latham's excellent book, but what I didn't realize is that the hatch normally extends all the way to the bottom allowing the water to freely drain.
Instead, I have it designed and built terminating at the floor. While I think I can seal around it - on the sides following Tony's method and on the bottom by adding a little threshold and seal (dark brown elements on the picture) this still leaves a little "shelf" on which the water can stand without any obvious way for it to drain.
Is it ok to leave it like this and simply cover it all well with epoxy to make it waterproof? Are there any other creative way of sealing this and avoiding the problem? Maybe adding a drainage of some kind?
In an ideal world I'd somehow cut the last two inches of what I have built already and extend the hatch all the way to the bottom, but I can't really imagine how to do it without making a mess due to how things are constructed.
Any recommendations greatly appreciated!
Extended galley wall and bottom seal shown in dark brown here. One of the hatch sides in dark gray:


I'm at the point now, that I want to start designing and building the hatch, and I realized I made a fundamental mistake when building the deck and the walls. I intended to follow a hatch sealing method from Tony Latham's excellent book, but what I didn't realize is that the hatch normally extends all the way to the bottom allowing the water to freely drain.
Instead, I have it designed and built terminating at the floor. While I think I can seal around it - on the sides following Tony's method and on the bottom by adding a little threshold and seal (dark brown elements on the picture) this still leaves a little "shelf" on which the water can stand without any obvious way for it to drain.
Is it ok to leave it like this and simply cover it all well with epoxy to make it waterproof? Are there any other creative way of sealing this and avoiding the problem? Maybe adding a drainage of some kind?
In an ideal world I'd somehow cut the last two inches of what I have built already and extend the hatch all the way to the bottom, but I can't really imagine how to do it without making a mess due to how things are constructed.
Any recommendations greatly appreciated!
Extended galley wall and bottom seal shown in dark brown here. One of the hatch sides in dark gray: