Rear Hatch Piano Hinge Repair

I purchased this new to me 4x8 TD and was planning to modify it to my liking. The sides had a wood grain finish which was nice but the veneer had a few cracks. So at the moment I'm in the midst of sanding it down, repair the cracks and then re-stain. The previous owner wasn't too handy so there was some neglect showing..
I noticed that at the ends of the rear hatch piano hinge he had placed some "Flex Seal" as he said there was a leak. I've read that for proper drainage that the "L" bracket channel running on top of the hinge must extend past the roof line to prevent water from sitting and creating a leak situation. There is a black plastic strip the runs along the edge of the roof that sits higher then this "L" bracket preventing a clear run over the side for draining, it would need to be bent to go over so then it wouldn't drain as intended. The Flex Seal has stopped the leak but it's a messy looking job that was done..
Question: What would be the best direction in attacking this..? Best to perhaps remove the Flex Seal that was applied then reapply it once again but nicer after cleanup..? Is there a better product to use other then Flex Seal..? Any thoughts on how to attack this..?
I noticed that at the ends of the rear hatch piano hinge he had placed some "Flex Seal" as he said there was a leak. I've read that for proper drainage that the "L" bracket channel running on top of the hinge must extend past the roof line to prevent water from sitting and creating a leak situation. There is a black plastic strip the runs along the edge of the roof that sits higher then this "L" bracket preventing a clear run over the side for draining, it would need to be bent to go over so then it wouldn't drain as intended. The Flex Seal has stopped the leak but it's a messy looking job that was done..
Question: What would be the best direction in attacking this..? Best to perhaps remove the Flex Seal that was applied then reapply it once again but nicer after cleanup..? Is there a better product to use other then Flex Seal..? Any thoughts on how to attack this..?