Itsdoable,
Having recently (today) had to rebuild my CT door due to rot, I think I can help answer some of your questions. Different manufactures doors are probably built a little differently, but they should all be about the same. I have included a picture of my newly rebuilt door frame. There are a couple of places that you really should not cut. that would be the top and bottom hinge attachment cross members. The mid section could probably be cut into without a lot of problems, but the two hinge cross members are all that hold the door to the hinges. The thin plywood inner skin and outter aluminmu skin does not provide a lot of strength. A small window placed between the upper and mid cross members would be ok. I am considering a porthole type window for mine. For now, it will be reinstalled without a window. Anyway, I hope the picture helps answer your questions.
