Welcome MTnadventure14.
I'll add:
-Have the factory install 4 stab jacks
-Consider getting standard (non-drop) axles for better ground clearance in forest service/hilly areas
-Single step mounted at RV door
-Be sure your trailer is built with 1" square tubing walls 16" and ceiling 24" for strength and custom mounting options.
-Flooring, rubber coin mat is popular, but we found a deal on a 6 x 15 commercial carpet/vinyl backed mat. Works great, provides some thermal break for winter as well.
-Have you looked into vertical E-track? Perfect for your project. Tons of uses.
-Windows, high and offset for great cross flow ventilation and better interior light.
-The factory installed RV door was worth it, many times over.
-Consider a military style bunk design, like the sleeping berth in a sailboat. Ours are so comfortable, now that the kids are grown, we often use them instead of the click clack fold sofa in the front.

Ours is pretty basic, but here's more ideas. Our PVC bike rack holds 6 across easily, and I use NRS kayak straps anchored on both walls at e-track, threaded around handlebar stem and seat stems. Holds bikes rock solid. (Bikes racked in opposing directions). Then we we get where we're going the rack moves outside the trailer against the fenders and presto, outside parking.
http://www.tnttt.com/viewtopic.php?f=42&t=48345Oh, and if you don't want the noise, and additional height of the roof a/c, check out our simple removable "closet" window A/C. (E-track to the rescue). In warmer weather we still can unload kayaks and bikes easily with the A/C in place, cooler weather, we remove the A/C "closet" and store it. Last winter, I never bothered to remove it. With barn doors, the A/C exhaust is closed to the "outside" left door, leaving the right door free for loading/unloading. When the right door is closed, the A/C is sealed to the inside, and works great even in the hottest weather.

Welcome to the madness, for your hobby, I expect there is no better solution than a cargo conversion. We now even use it for day trips kayaking, it is so convenient to have your secured storage, changing room, picnic etc. I used to think it was overkill hauling the trailer, but now I can't imagine going on an adventure without it as a base camp, etc.