I built my doors similar to how you propose to build yours. Initially, per the sketch below, I was planning on using an outer seal on the t-molding and an inner seal on the door jamb.

However, the seal on the t-molding worked so well that I never got around to installing the inner seal (or the rain gutter above the door.)
The seal I used on the t-molding was a "D" type seal. As the previous posters stated, you need to leave room for the seal. Generally, the seal should only compress about 1/3 of the seal height. To allow for the seal thickness, I used 1/8" thick nylon spacers to offset the plane of the door from the plane of the sidewall. This 1/8" "gap" allowed for the D seal to compress appropriately.



Lastly, if you plan to use t-molding on the hinge side of the door, you need to make sure that the pivot point of your hinge is outside or beyond the outer edge of the t-molding. Otherwise, the t-molding will bind on the door when you try to open it.
